I highly doubt the threads were damaged on disassembly. The only time that happens is sometimes if a bolt has been in there for so long and corroded in place, but given that this motor was just recently assembled, that means either the builder damaged them, or the builder didn’t notice them being damaged when he was assembling the engine. Either way, it doesn’t look good for him.
As for repairing the threads, I’m very leery of helicoils in general, let alone in a high torque situation like a head bolt, but switching to another block is basically rebuilding the engine all over again, so it may be worth a try. Maybe see if a timesert would work there instead of a helicoil. Those are a much better way to repair threads, assuming it can be done without interfering with the deck surface. Regardless, I would definitely switch to head studs instead of bolts. Not only are they reusable, but they are less prone to stripping out the threads in the block so if the threads in any other holes are questionable, you will be less likely to have an issue.
If you do decide on going with another block, I see you are in Philly which isn’t too far from me, and I do have a complete SC engine that had high mileage but ran fine, that I would let go cheap.