The coolant line in the first picture goes to the throttle body. There is a port along the bottom of the throttle body that the coolant runs through, and it connects to a line that runs along the intake manifold. The vacuum lines in your second pic are for the EGR, so if you have deleted that, you can just block off the line that would have gone to the EGR valve. Also in that pic you can see the vacuum line that goes down into the passenger fender. That line attaches to the piece of line coming out of the firewall, which is used for the mode door selection for the HVAC behind the dash. The line in the 3rd pic is the EVAP line. The purge valve is on the charcoal cansister, so that just has to go to any vacuum source before the supercharger.
Your “main vac” line is the main vacuum manifold. You’ll see it connects by the hard plastic line to the similar grey piece that is toward the center of the firewall. Those lines go up along the firewall under the wiper cowl. Those get vacuum source from the large hose to the right of your hand in pic#3 that connects to the grey piece and then disperse vacuum out to various other things. One note on the black piece, some of the ports are for vacuum and some are for the windshield washer, so don’t mess that up or you’ll be sucking washer fluid into the engine. I believe the 2 open ends are for the washer fluid, and the hose for that runs along the driver’s side frame rail and comes up by the brake booster.
Once you have all that setup, it is really just a matter of hooking things up in a way that everything fits and reaches. The line for the boost gauge is the one on the driver’s side of the return plenum which you already have connected, and the line for the fuel pressure regulator is on the back of the return plenum. Both of those must go to those locations because they need to see vacuum and boost, but all the other ports are only getting vacuum, so as long as it connects, it will work.